Teaching

Public resources

Machine learning for systems biology

• Website and repository with lecture notes
• Repository with code
• Set of notebooks on JuliaHub (click the “>” icon in the top right to expand the full list of available notebooks)

Causal inference in drug discovery

• Repository with notebooks and slides for a short course in causal inference in drug discovery

Introduction to causal inference

• Lecture 1: Linear structural equation models and the method of path coefficients
• Lecture 2: Bayesian networks, interventions, and causal discovery

Analysis of biological sequences and structures

• Set of marimo notebooks on molab:
  • BINF200-antigen-diversity-in-trypanosoma-brucei-infections
  • BINF200-msa-phylogenetics
  • BINF200-sequence-motifs
  • BINF200-motif-discovery
  • BINF200-hmm
  • BINF200-RNA-fold
• (Outdated) repository with code and assignments
• Educational dataset with long read sequencing data from Trypanosoma brucei infections

List of courses and lectures

Semester	Course	Lecture Material
Autumn 2025	BINF200 Analysis of biological sequences and structures	On Mitt
Spring 2024	BINF301 Genome-Scale algorithms	On Mitt
	NOVAMATH Thematic Weeks 2024
Autumn 2023	BINF200 Analysis of biological sequences and structures	On Mitt
Spring 2023	BINF301 Genome-Scale algorithms	On Mitt
Spring 2022	BINF301 Genome-Scale algorithms	On Mitt
Spring 2021	NORBIS Summer School 2021
	NORBIS Course Genomics for Precision Medicine
	MNF130 Discrete Structures	On Mitt
Spring 2020	MNF130 Discrete Structures	On Mitt
Fall 2019	BINF305 Systems Biology	On Mitt
Spring 2019	MNF130 Discrete Structures	On Mitt
	NORBIS Course Computational Approaches in Transcriptome Analysis	On GitLab